PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 910560
Common NameARALYDRAFT_910560
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 233aa    MW: 25931.7 Da    PI: 7.4995
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
910560genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2157e-056183123
             EEETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
             ++C++C ++F ++  L  H++ H
   910560 61 FSCNYCQRTFYSSQALGGHQNAH 83
             89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.3E-45387IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.59E-75688No hitNo description
PROSITE profilePS5015711.6356188IPR007087Zinc finger, C2H2
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MDASIVSSST AFPYQDSLNQ SIKYEEKDVH DPSQELNLID CIDDTASIVN GSTTSTEQKL  60
FSCNYCQRTF YSSQALGGHQ NAHKRERTLA KKGQRMAASA SAFGHPYGFS PLPFHGLYNN  120
NRSLGIQAHS MSHKLSSYSG FGGHYGQVNW SRLPFDQQPA IGKLPSMENF HHHHQMMMAP  180
SVNSRTNNID RPSNTGRILE GSPTLEQWHG DKVLLSSNHH EEQQKLDLSL KL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0062590.0AC006259.1 Arabidopsis thaliana BAC F21J6 from chromosome V, containing KNAT3 and mapping near 60.5 cM, complete sequence.
GenBankAK2277060.0AK227706.1 Arabidopsis thaliana mRNA for ZFP3 zinc finger protein, complete cds, clone: RAFL14-29-I08.
GenBankATHZFPC0.0L39646.1 Arabidopsis thaliana zinc finger protein (ZFP3) mRNA, complete cds.
GenBankBT0083080.0BT008308.1 Arabidopsis thaliana At5g25160 gene, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002872142.11e-175hypothetical protein ARALYDRAFT_910560
SwissprotQ392621e-149ZFP3_ARATH; Zinc finger protein 3
TrEMBLD7M3V01e-175D7M3V0_ARALL; Putative uncharacterized protein
STRINGscaffold_602617.11e-175(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18932771
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25160.11e-150zinc finger protein 3